rs27620103 SNP Detail

Summary

• ID
  rs27620103
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135666264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAGGTCA CATAGCATTA
  CTTTATCTGT ACAGATTCTC TCATCCCTGG AGGCAACCAG GCCTTGGGGG CCAGTATTTA
  GCATCACAGT ACATAGCAAA AGACCAAACC TCCACATTCC TGTCTCCTCC CAGTGCTAAA
  ATTACCCCAT GCCTGGCTAA TGGCAGGCTT TTGCTTCTTC CTTCCCAGGT TCCTTCCACA
  S
  GAATGTCCCA CCCACCTGTC TTTGCTGTTC TGTCCCAGCA CAGCTTTTCC CCCACCATAT
  CTGGAGCACA GTCTGCTCAT CAGTGAATAA CCGGGTGCTC TCCACTTTTG CCTTCTGCAG
  ATAACAATGC TAGGACTAGA AGGAGACCTG AGCTGGACCC AGGATCCACT GGAGGGCGTC
  CTCATCTCTC TGCCACAGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37778145	NES09152819	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27620103					SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778145	NES09152819	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135666264 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fuca1	fucosidase, alpha-L- 1, tissue			Intron
				Noncoding-Transcript-Variant
Rr602205	regulatory region 602205			162 bp proximal
Rr602206	regulatory region 602206			196 bp proximal