rs27620102 SNP Detail

Summary

• ID
  rs27620102
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135666278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATTACTTT ATCTGTACAG
  ATTCTCTCAT CCCTGGAGGC AACCAGGCCT TGGGGGCCAG TATTTAGCAT CACAGTACAT
  AGCAAAAGAC CAAACCTCCA CATTCCTGTC TCCTCCCAGT GCTAAAATTA CCCCATGCCT
  GGCTAATGGC AGGCTTTTGC TTCTTCCTTC CCAGGTTCCT TCCACACGAA TGTCCCACCC
  R
  CCTGTCTTTG CTGTTCTGTC CCAGCACAGC TTTTCCCCCA CCATATCTGG AGCACAGTCT
  GCTCATCAGT GAATAACCGG GTGCTCTCCA CTTTTGCCTT CTGCAGATAA CAATGCTAGG
  ACTAGAAGGA GACCTGAGCT GGACCCAGGA TCCACTGGAG GGCGTCCTCA TCTCTCTGCC
  ACAGTTGCCA CCTACCGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37778144	NES09152820	PERLEGEN	MM_PANEL2	f	SNP	G			A	A	A	A		A	A	A	G	G	A	A	G	A
ss45661534	mCV22566161	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		A
ss147554412	ENSMUSSNP458391	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27620102					SNP	G	G	G	A	A	A	A	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778144	NES09152820	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135666278 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fuca1	fucosidase, alpha-L- 1, tissue			Intron
				Noncoding-Transcript-Variant
Rr602205	regulatory region 602205			148 bp proximal
Rr602206	regulatory region 602206			182 bp proximal