rs27620098 SNP Detail

Summary

• ID
  rs27620098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135666705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTGACAA AGGTGAACTG
  ATCAAAGGAG CTCAAGGACA GACTGCCTGG GGCGCTGCTT ACCATCCCTG CAATAAAGTA
  GCTTCCCTTC CTTCCACCCA GTGGTCAATC TCCCAAGCCG TTCTAATGGA TGGGCGAGCC
  ATTGCTAGCA TTTCTGGTGG GCAGAGAGAC CTGGCCAGCT CAGCTGAGTC ACCCATGCCT
  Y
  CACTAGGGTG GAACTTCCCT CTCTTCTCTG ATGACCTACC TGATAATGAG CCAAGTCATC
  CTCTTGCCTG TGGGAGCAGG TCAGAGAGGT CTGGCGAGCT CAACCCCCTC TGCCTTATTG
  GTTGGTACCA GTCCCGCAGA GATGGACCAG GTCCTGCCCT CCGGGCTTGC CAGGCTGTCA
  TGCCAAGCAA GCCAAACGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37778139	NES09152829	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		T	C	C	C		T
ss321353532	CHEV_4_135495309	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27620098					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778139	NES09152829	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135666705 () rs orientation: forward

Symbol	Name	Function Class
Fuca1	fucosidase, alpha-L- 1, tissue	mRNA-UTR
Rr602205	regulatory region 602205	258 bp distal
Rr602206	regulatory region 602206	224 bp distal
Rr602207	regulatory region 602207	1829 bp proximal