rs27620097 SNP Detail

Summary

• ID
  rs27620097
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135666800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCAGTGGT CAATCTCCCA
  AGCCGTTCTA ATGGATGGGC GAGCCATTGC TAGCATTTCT GGTGGGCAGA GAGACCTGGC
  CAGCTCAGCT GAGTCACCCA TGCCTCCACT AGGGTGGAAC TTCCCTCTCT TCTCTGATGA
  CCTACCTGAT AATGAGCCAA GTCATCCTCT TGCCTGTGGG AGCAGGTCAG AGAGGTCTGG
  Y
  GAGCTCAACC CCCTCTGCCT TATTGGTTGG TACCAGTCCC GCAGAGATGG ACCAGGTCCT
  GCCCTCCGGG CTTGCCAGGC TGTCATGCCA AGCAAGCCAA ACGCTCTGCC ACTGAGCACG
  TCTTCAGAGA TATCCCGTCC CTCGGGATTC AGTTATTCGT GGGTGCCAGG GGGACCGCAG
  ACCTGTAAGG ATATGGGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37778138	NES09152831	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27620097					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778138	NES09152831	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135666800 () rs orientation: forward

Symbol	Name	Function Class
Fuca1	fucosidase, alpha-L- 1, tissue	mRNA-UTR
Rr602205	regulatory region 602205	353 bp distal
Rr602206	regulatory region 602206	319 bp distal
Rr602207	regulatory region 602207	1734 bp proximal