rs27620094 SNP Detail

Summary

• ID
  rs27620094
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135667054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCCTGCC CTCCGGGCTT
  GCCAGGCTGT CATGCCAAGC AAGCCAAACG CTCTGCCACT GAGCACGTCT TCAGAGATAT
  CCCGTCCCTC GGGATTCAGT TATTCGTGGG TGCCAGGGGG ACCGCAGACC TGTAAGGATA
  TGGGATTGGA AGAGAAAAGA GAAGCAGATG ACCAAGTAGA TTGTACCTAT CAAGGTCTCC
  R
  TTTATTATGC TGAGGTGCCT TGTTTTATAG CATACATTGC AGGGAATGGG GAGGGGTCGA
  GGGGGAATTT TAACAAAGAA CAAAAAAGTG GGCATCTGCT CACATGAGGT CCGAAGTCAG
  GCTCCAGGCG GCGGGCACTC TGCATCTTAT AGATCTATGC GGAACATAGA TCCTCCTTGA
  CAGCCTTGGG GTGTCAGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37778135	NES09152838	PERLEGEN	MM_PANEL2	f	SNP	G			A	A	A	A		G	A	A	G		G	A	A	G		A
ss45567538	mCV22566158	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		A
ss147554429	ENSMUSSNP5007143	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							A
ss321353534	CHEV_4_135495658	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27620094					SNP	G	G	G	A	A	A	A	A	G	A	A	G	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778135	NES09152838	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135667054 () rs orientation: forward

Symbol	Name	Function Class
Fuca1	fucosidase, alpha-L- 1, tissue	mRNA-UTR
Rr602205	regulatory region 602205	607 bp distal
Rr602206	regulatory region 602206	573 bp distal
Rr602207	regulatory region 602207	1480 bp proximal