rs27620091 SNP Detail

Summary

• ID
  rs27620091
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135667909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCACTTG GTACCATGCT
  TGCTTGGATA CACAGAGCCC TTGGTTCAGT TCCTGGCACT GCATAAACCA AGTGTGGTAT
  GCATGCCTGT GATCCAACAG GATCCGAAGC TAGTCCGGCC TGTCTATATA GTGAGCTCAA
  GGCTGCCCTA AGCTGTATAG ACTGTCCAGA GGAAGGGAAG GAGGAGAGAG CTAGCTTGTT
  K
  GGTCTCTTTA ATGCAGAACA CTGTGTGTGG TCCCTGGGGC TTCTCTCTCA TTCTGGTGTC
  TGTCTTTGAC AACTACCAGC TCAACCTGTG CTTCACTGTG TACTCAGGAA TTTATGTGCA
  GAGGGCATTG GATCCTCCAG AACTGGAGTC ACGGACAGTT CTGAGCTGTC ATGTGGGTGC
  TGGGAACTGA AATCAAAGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37778132	NES09152742	PERLEGEN	MM_PANEL2	f	SNP	G		G	T	T	T	T	T	G		G	T	T	G		G
ss147554450	ENSMUSSNP6169421	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						T
ss321353543	CHEV_4_135496513	CHEVERUD	SCREENING_POP	f	SNP										T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27620091					SNP	G	G	G	T	T	T	T	T	G	T	G	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778132	NES09152742	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135667909 () rs orientation: forward

Symbol	Name	Function Class
Fuca1	fucosidase, alpha-L- 1, tissue	298 bp downstream
Rr602205	regulatory region 602205	1462 bp distal
Rr602206	regulatory region 602206	1428 bp distal
Rr602207	regulatory region 602207	625 bp proximal
Rr602208	regulatory region 602208	1374 bp proximal