rs27620083 SNP Detail

Summary

• ID
  rs27620083
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135673272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAGCCAT CTCACCAGCT
  CCACAGTGAA CCTTTATATT CTACTTTGTG ACCTTAACCT TTGGGGCGGG ATCTGCGCCA
  TTCTGCATGA TGCACACGCA TGTTTAGTCA TTTGAAGACT TCCCCACTGA GGCTGAGGAC
  GGGAAGACAA GAAGGAAGTA AGACAGTGTA TACACAGGGA CACAATGATT TCCTAATGGC
  Y
  AGCTTCAGGG TTTCACAAGT CACCCGAGCA CCAGTAGTAG CCCCTAGAAG CCCACAGTTA
  TAGCAGTCCT TCGCTAACCT AGGCCTTCTT GCCTTCCCTG TTCCTTTAAG ACTAAAGGAG
  CCATCGGCTT GGCCCACCAG CTTCCCAGTC ATCTTCAACC CCAACACGCC CTGGGAACAC
  AACGCCTTTC AGAAGGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37778124	NES09152562	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27620083					SNP	C	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778124	NES09152562	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135673272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15085	CpG island 15085	314 bp proximal
Gm69275	predicted gene, 69275	78 bp downstream
Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	504 bp upstream
Rr602211	regulatory region 602211	within coordinates
Rr602212	regulatory region 602212	406 bp proximal
Rr602213	regulatory region 602213	498 bp proximal
Tssr39660	transcription start site region 39660	486 bp upstream
Tssr44007	transcription start site region 44007	404 bp downstream