rs27620082 SNP Detail

Summary

• ID
  rs27620082
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135673899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGT CATGGGATCG GGCGGGCCTC
  Y
  TCAGCTGCTG TGACAGGCGG AGGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37778123	NES09152518	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C		C	C	C		T
ss321353561	CHEV_4_135502503	CHEVERUD	SCREENING_POP	f	SNP								T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27620082					SNP	C	C	C	C	T	C	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778123	NES09152518	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135673899 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15085	CpG island 15085			within coordinates
Gm69275	predicted gene, 69275			211 bp upstream
Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase			Intron
				Noncoding-Transcript-Variant
Rr602211	regulatory region 602211			222 bp distal
Rr602212	regulatory region 602212			130 bp distal
Rr602213	regulatory region 602213			within coordinates
Rr602214	regulatory region 602214			1651 bp proximal
Tssr39660	transcription start site region 39660			93 bp downstream
Tssr39661	transcription start site region 39661			1828 bp upstream
Tssr44007	transcription start site region 44007			206 bp upstream