rs27620068 SNP Detail

Summary

• ID
  rs27620068
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135680101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATGTCCC TGGCTTGAGG
  GCTCTCAGGT GAATCTGAGC ACTGTGTAGC ATGGGAAGAA CTCGACCTGG GAGCCATGGG
  CTTTGATTCA TTCTGGGCTC TGACCTGGCT TACTGGAGCT CTTGCTTAGT GAGGCCTTTG
  CCCTCTTCAG TTAGAGATGG CCTCTGAGGT CTCTCCTAGC TCTGAGAATA TAGGATGCTG
  R
  TGATCTGCAC TATCTGTGTT TGTAAAGGGG AGAGCGAAAA TTTGTCTTAG TTAGGGTTTT
  GCTGCTATGA ACAGACACCA TGACCAAGGC AACTCTTTTT TTTTTTTTTT TTTTTTTTGG
  TTTTGGTTTT TTGAGATAAG GTTTCTCTGT ATAGCTCTGG CTATCCTGGA ACTCACTTTG
  TAGACCAGGC TGGCCTCGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37778108	NES09152295	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G	A	G	G	G	A	G
ss147554653	ENSMUSSNP806196	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27620068					SNP	A	A	G	G	G	G	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778108	NES09152295	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135680101 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase			Intron
				Noncoding-Transcript-Variant
Rr398602	regulatory region 398602			1513 bp upstream
Rr602216	regulatory region 602216			1088 bp distal
Rr602217	regulatory region 602217			405 bp proximal
Rr602218	regulatory region 602218			1548 bp proximal
Rr602219	regulatory region 602219			1649 bp proximal