rs27620064 SNP Detail

Summary

• ID
  rs27620064
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135681344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTTGGCT TCTTCGGCTC
  CCAGATGGCT GACCACTCTG ACGTCTTGAA GGGCATTCAG AAGTTTCCCG GCATCAACTA
  CCCAGTCCTG ACTCCAAACA TGAAAGGCTT TGAGGAAGCG GTAAGAGGTT GACTGGCGAG
  GCCCCTGAGA GAGACTGATG GTTACCAGTC CCTGCCTTGT CCTGGGATGT CCCTCTGAAC
  R
  GCCTGCCACC AGTGGGGCTG AATACCATCA GACTGGGGCT GGGGGTGGGG CTGGAGGGTT
  TGGGGGAGGG GGGAGTTCAG CCCTGTCACT CACTCCTCTG TTGTCTTGAT GAATTGCTTA
  ACCTCAGTCA GTTCTGCCTC TGAGCCACGA ACGATAGCAG CACTTTACCA CTAAGTGGAT
  GCTCCCATAA TCAATGTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37778104	NES09152230	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27620064					SNP	G	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778104	NES09152230	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135681344 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase			Intron
				Noncoding-Transcript-Variant
Rr398602	regulatory region 398602			270 bp upstream
Rr602217	regulatory region 602217			413 bp distal
Rr602218	regulatory region 602218			305 bp proximal
Rr602219	regulatory region 602219			406 bp proximal