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rs27620055 SNP Detail
Summary
  • ID
    rs27620055
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:135683069 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGCTAAAGGT ATTCACTGGG
    TATTGGCAGG TAGCTGCGGG TGCCAAGGAA GTGAGCGTCT TCGGTGCTGT GTCTGAGCTC
    TTCACCCGGA AGAACGCGAA CTGCTCTATA GAGGAGAGTT TCCAGCGCTT TGCTGGAGTC
    ATGCAGGCGG CCCAGGCCGC CAGCATCTCT GTGAGAGGGT GAGTGAGCCC CTTTCTCGGG
    R
    CCCTTGTAGA GTGTAGGTGG ATTCCCCCAC CTGCCGGTCG GTCTCTCTCC CTCGGGCTGG
    GTGTCCCAAG CTCTACTCCT GGGAACCTTT CTCCAAGTGC ATGTGGTCAG ATGAGCCGGG
    CTTTCTCTCA GACATACAGT GTTGACTGAC CAAGTGTAGG TCAAGCCAGC CTGGAACTCA
    CAGACATCCA GCTGACCCTG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37778095 NES09152140 PERLEGEN MM_PANEL2 f SNP G A A A A A A A G G A A G A
ss45697508 mCV22566120 ABI CRAMUS_MOUSE f SNP G A A A
ss147554694 ENSMUSSNP6871518 ENSEMBL ENSEMBL_Sanger f SNP G A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27620055 SNP G G A A A A A A A A G G A A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37778095 NES09152140 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:135683069 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Hmgcl 3-hydroxy-3-methylglutaryl-Coenzyme A lyase Intron
Noncoding-Transcript-Variant
Rr398602 regulatory region 398602 1154 bp downstream
Rr602218 regulatory region 602218 1051 bp distal
Rr602219 regulatory region 602219 1298 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory