rs27620011 SNP Detail

Summary

• ID
  rs27620011
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135708189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCCTAAA TTCAATTCCT
  AACAACCACA TGAAGCCTCA CAACCATCTA TCTGTACACC GTACAGCTAT AGTGTACTCA
  TATACATAAA ATAAGCAGAT AAATCTTTAA AAGAAGCTGC CAGTAAAGAA AATATTAACT
  AACAAATTCT GAAGCGCTCA GCTCCTATCA CTTCAAGGTA TCTGATTGAC ACACCCACTG
  Y
  AGCAGAATGT GTGTCACTAA AGAAGGCAGG TGTTTGCTTC AAAGCGTTTC TGAGACACGT
  CCACAGCAGG GTAATGACAG TGAGCATTCA CGAGCAGCAT TATGAGGCAG GGCAGCACTG
  TAGTTAAACA TCCAGGCTTC CATTTACAGA GCGACAGACA GTGCAGCAAG CTACTCTGAC
  ACCGGTGAAC AGTGTGTCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37778048	NES09151685	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T	T	T	T	T	C	T
ss147555232	ENSMUSSNP3175269	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27620011					SNP	C	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778048	NES09151685	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135708189 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm69125	predicted gene, 69125			within coordinates
Pithd1	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr602230	regulatory region 602230			658 bp proximal
Rr602231	regulatory region 602231			969 bp proximal