rs27619949 SNP Detail

Summary

• ID
  rs27619949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:169881174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAACTGC AAAGGTGAGC
  AGACTGGTGT AGGTCACATG ATGGGGGGAC CATCATTCTG GGAGTTGACT GGACATCTGA
  ACTGTGAGGA ATCTGAGAGT CTGGGGAGAA GCTGACCAAC TCAACGTCAA GATACCCCTA
  CCCACCCCCA CCCCACCCCC CACCTCGCGC ATGCGCTCCC CCACCCCTCT TTTCCCAACG
  Y
  GCAAATGTCT TGTTGTTTGG AGGTCTGTAC CAAACTAATA AGGCTCATTG GCAAGGTGAG
  TTTATCTCAC TTAAACCGTG TTCTAAAGAA ACAAAATGAC AAAGGCCCCA ACCGAGGCAG
  GCATGAGTGT GATGCTTTTG CTGTGAAGAA AGGACTCTGT GGGTAGGGTT TTGTAGGAAA
  GGAAGGAGAA CCCTTGAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37818998	NES08709304	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27619949					SNP	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818998	NES08709304	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169881174 () rs orientation: forward

Symbol	Name	Function Class
Rr571301	regulatory region 571301	1538 bp distal
Rr571302	regulatory region 571302	1580 bp proximal
Tshz2	teashirt zinc finger family member 2	Intron