rs27619755 SNP Detail

Summary

• ID
  rs27619755
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169941928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATTTCCT GAGGATGGAC
  AAAGATAAGC AATCTGGCCC AACCAATCAG GGTGCGCCAT CTTCCGGGAT ACCATGACTA
  GTTCAGCCAT CAGCTGTGTA ACCAAGACCA GCCAATGATC ATTTCCCTGG ACTTATAATA
  AAATAAAAAC CAGAAAGAAG GAAATTAAGT GACCTCCTCT CTTCTGCAGT CCAGTCTTTC
  Y
  CTACAGCAGC CGTTTTCAAC CTGTGGGTCG AGACCCTTTT CGGGCTGTTG AACAATCTTT
  TATCAGGGGC CGCATAATAG ATAATTCTGC TTATCAGAAA TTCACATTAC AATTCATAAC
  ACTAGCAAAA TTGCAGTTAT GAAGTAACAA TGAAAATAGT TTTATGGCTG GGGTCACCAC
  ATGGAGAATT TTCAAGAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37818799	NES08707598	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27619755					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818799	NES08707598	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169941928 () rs orientation: forward

Symbol	Name	Function Class
Rr571323	regulatory region 571323	1042 bp proximal
Rr571324	regulatory region 571324	1346 bp proximal