rs27619753 SNP Detail

Summary

• ID
  rs27619753
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169942803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTGGGTG TCAGATCCGC
  CGGAGCTGGA GTTACCGGCA GCTGTGAGCT TCCCAGGGTG AGTGGAACTG AGCTCAGGTC
  CTCTGCAATA GCCACGTGAC TTCTTCCACT AAACCACCTC TCCCGTATTT TGCTTTTATG
  CCTTTCACTA TTTAATGACG TTTGGTGGCA TTTCCAGGCT GCCTTGTTCC CCTTTTGTGA
  R
  TGGTAATAGT TAACACTAAT ATAATTCTGT TGCTATATTT TTTTAATAAC CTCCCTCCTC
  TGGCAAAATC AAAATATGGC ATTCTGCGAC GACACTAAAC TGTTCAGTGC CGTTGGTCAA
  CGAATTGTGG AAATCTGTGA AGGACTGCCC CAATACAAAA TTAAGTCTTT CATTCTCTTT
  GAAATAATTA CACCAGAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37818797	NES08707560	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27619753					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818797	NES08707560	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169942803 () rs orientation: forward

Symbol	Name	Function Class
Rr571323	regulatory region 571323	167 bp proximal
Rr571324	regulatory region 571324	471 bp proximal
Rr571325	regulatory region 571325	1471 bp proximal