rs27619752 SNP Detail

Summary

• ID
  rs27619752
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169942957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACGTTTG GTGGCATTTC
  CAGGCTGCCT TGTTCCCCTT TTGTGAATGG TAATAGTTAA CACTAATATA ATTCTGTTGC
  TATATTTTTT TAATAACCTC CCTCCTCTGG CAAAATCAAA ATATGGCATT CTGCGACGAC
  ACTAAACTGT TCAGTGCCGT TGGTCAACGA ATTGTGGAAA TCTGTGAAGG ACTGCCCCAA
  Y
  ACAAAATTAA GTCTTTCATT CTCTTTGAAA TAATTACACC AGAGCAAAAA GCATACTCTG
  CCTGTGACAA AGTTCTCAGG GCATCCTTGG CAGTCTCCCC AAAATGAGTC TGCTGTGAAC
  TCTGTCTCCA CAGCTTCACA GATCAGAACC TTCCATTTGA TAGCCTCGGG CCAGACCTGG
  TCTGTATCGG TCTGTATCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37818796	NES08707561	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27619752					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818796	NES08707561	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169942957 () rs orientation: forward

Symbol	Name	Function Class
Rr571323	regulatory region 571323	13 bp proximal
Rr571324	regulatory region 571324	317 bp proximal
Rr571325	regulatory region 571325	1317 bp proximal