rs27619749 SNP Detail

Summary

• ID
  rs27619749
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169943772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCCAGAT TGTTTGGAGA
  GTAAGAAGTG CCTGCCCCAC GTGCCTGATG AACTAAGAGA GACTCCCCAG AGCCCACATA
  AAAGTGAAAA TAGAGAGCCA TCTTCAAAAG CTTGCCCTGT GACCTCCAGG GTACCGTGCC
  ACATGTACCT ACGCAAGGCA CCCTATGTAC ACATACAATA ATAATAGTCA AAGAAACAAG
  Y
  GTTAAATGCA CAGAAGCATC CGAGGTTGCT GGGCACAAAT AAAAGTTCAG GAAACATTTG
  CTATATTTGG GGTGGGAGGG GGGGGCAGTT TTCAGGATTG CTTTTAATAT TTTTATATAT
  AGGTATCTGC ATGCGGGTAT GTGCACATGT GTGCATGTAC CCAAGGAGAC CACAGGGACC
  CGGTGCCCTG GAGCTGAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37818792	NES08707527	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27619749					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818792	NES08707527	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169943772 () rs orientation: forward

Symbol	Name	Function Class
Rr571323	regulatory region 571323	20 bp distal
Rr571324	regulatory region 571324	477 bp distal
Rr571325	regulatory region 571325	502 bp proximal
Rr571326	regulatory region 571326	1929 bp proximal