rs27619747 SNP Detail

Summary

• ID
  rs27619747
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169944021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAACATT TGCTATATTT
  GGGGTGGGAG GGGGGGGCAG TTTTCAGGAT TGCTTTTAAT ATTTTTATAT ATAGGTATCT
  GCATGCGGGT ATGTGCACAT GTGTGCATGT ACCCAAGGAG ACCACAGGGA CCCGGTGCCC
  TGGAGCTGAA CCCCAAACTC CGGGCTTCTG AAGAGAAGAG CATCTGAAGA AGAGCACTGG
  Y
  TGTTCTTAAG GAGAGAACTG TCCCCTGCAG GGGGTGCTCT GGCTCCCGCT CACAGGCCCT
  GGCATTCACC CCCAACGAAG ATGTAATTTC CTTTTCTCTT TTAAAGAGCT GCCTTAACAG
  AAAATAACGG ACGGGTTTTT GTAAACTTGT TTTTATTTAT TTTTTTTAAA GATTTATTTA
  TTTATTTATT TATTTATTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37818790	NES08707516	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27619747					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818790	NES08707516	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169944021 () rs orientation: forward

Symbol	Name	Function Class
Rr571323	regulatory region 571323	269 bp distal
Rr571324	regulatory region 571324	726 bp distal
Rr571325	regulatory region 571325	253 bp proximal
Rr571326	regulatory region 571326	1680 bp proximal
Rr571327	regulatory region 571327	1953 bp proximal