rs27619746 SNP Detail

Summary

• ID
  rs27619746
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169944080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTTATA TATAGGTATC
  TGCATGCGGG TATGTGCACA TGTGTGCATG TACCCAAGGA GACCACAGGG ACCCGGTGCC
  CTGGAGCTGA ACCCCAAACT CCGGGCTTCT GAAGAGAAGA GCATCTGAAG AAGAGCACTG
  GTTGTTCTTA AGGAGAGAAC TGTCCCCTGC AGGGGGTGCT CTGGCTCCCG CTCACAGGCC
  M
  TGGCATTCAC CCCCAACGAA GATGTAATTT CCTTTTCTCT TTTAAAGAGC TGCCTTAACA
  GAAAATAACG GACGGGTTTT TGTAAACTTG TTTTTATTTA TTTTTTTTAA AGATTTATTT
  ATTTATTTAT TTATTTATTT ATTTATTTAT TTATTTATTT ATTATATGTA AGTACACTGT
  AGCTGTCTTC AGATACTCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37818788	NES08707518	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27619746					SNP	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818788	NES08707518	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169944080 () rs orientation: forward

Symbol	Name	Function Class
Rr571323	regulatory region 571323	328 bp distal
Rr571324	regulatory region 571324	785 bp distal
Rr571325	regulatory region 571325	194 bp proximal
Rr571326	regulatory region 571326	1621 bp proximal
Rr571327	regulatory region 571327	1894 bp proximal