rs27619445 SNP Detail

Summary

• ID
  rs27619445
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135152293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGAATAAG TGAATGAATA
  AAAACTGCAT TCTTTTTTTT TTTTTTTTGA CTTTTCAAGA CAGGGTTTCT CTTTATAGCC
  CTGGCTGTCC TGGAACTCAC TTTATAGACC AGGCTGGCCT CAAACTCAGA AATCCGCCTG
  CCTCTGCCTC CAGTAGTGCT GGGTGGGATT AAAGGCGTGT GCCACCACTG CCCAGCAAAA
  W
  GTGCATTCTT AGCCAGGTAT CGCCCTGACT CAGAGTTCAC TAGTTCATTG TTCTTCCAGT
  GTGGTGGGAG GACTGGCTCT GAACTATGCC TGACGGTGGC ACACTGAGAC TCTCCTAAGG
  CACAGAGAGG GGCCAGCGTG ATACACACTG TGTATATAAT GTCACAGGCT CAGGGGCCAA
  AGCTATCTTT GCTTCCCACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37780072	NES09146994	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27619445					SNP	T	T	T	T	T	T	T	T	A	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780072	NES09146994	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135152293 () rs orientation: forward

Symbol	Name	Function Class
Gm69999	predicted gene, 69999	within coordinates
Rcan3	regulator of calcineurin 3	Intron
Rr367746	regulatory region 367746	1711 bp upstream
Rr602028	regulatory region 602028	540 bp proximal
Rr602029	regulatory region 602029	1769 bp proximal