rs27618816 SNP Detail

Summary

• ID
  rs27618816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170284973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTGTTTT AAAATGTTTC
  TACTCTTCAT GTTTAAGTAA AACAGTCAAG GCTTAGAGAA CAGAAGAAAC TATGTTTCCC
  CAACTAGTAC CTGACAGAGC TGAAATCCAA ACTCAGATGT GACGTTACTT TCAATAGCTT
  GAAGTCACCC TTCCTTCAGA CCGGTCACTC TGATCTTGCT TCTAGCCCGG AGCTTCCATA
  Y
  TGTGAGTCAA ACAGGACTTG TGGGTGTCTC CTCTCGGGGT TCTCGTATAG GACACTCCCT
  AGAAAGAGGA ATGGCTCAAG GGTCAAGAGG CTTGGATGGC ATCCCAGGAG GGTCCTGCAC
  CTGCATTCTG GAGTGAGGAC ACACTCTATT CCCCAGTGAC AGACTTCTAG GATTGTGTGG
  ACTAATCATA GTTGGCGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37817743	NES08711244	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27618816					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37817743	NES08711244	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170284973 () rs orientation: forward

Symbol	Name	Function Class
Gm74953	predicted gene, 74953	within coordinates
Rr571442	regulatory region 571442	542 bp distal
Rr571443	regulatory region 571443	236 bp distal
Rr571444	regulatory region 571444	307 bp distal