rs27618809 SNP Detail

Summary

• ID
  rs27618809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170285467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCAACTA TTCATCTACC
  CACCTATCCA GATTATTCAG ATATAAGTCT ATTGAACTAC CCATTCCCCT ACCCAGCCAC
  CAGCCCATAC ACCCAGGCCT CCATGCAAGC ACTCATCTCT TCCAGCACTT ATTAAGCGCC
  CACAGTGTGC CGGACACTAA AGGCTAAGCT TCCAAAGGAG AGAGAGTGAA TGTTTGTCTG
  Y
  CTTACGAGGG ATCACTGTCT AGAAAGGACT GTGTGGAAGC TGGGACTGTT CAAAGGCTTG
  TAAACTGAGG GGGAGTCTCA GTCTCAGAAG AGATTTTATT CCCAGCCTGG TGTTGAAGCA
  AACGCTTTGT AAACCGAGAA TCGGATTTCA AAAACACTAG CTGGCATCGG TCAGGCTAAA
  AACACAGGCA GGGAGGGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37817736	NES08711259	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27618809					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37817736	NES08711259	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170285467 () rs orientation: forward

Symbol	Name	Function Class
Gm74953	predicted gene, 74953	within coordinates
Rr571442	regulatory region 571442	1036 bp distal
Rr571443	regulatory region 571443	730 bp distal
Rr571444	regulatory region 571444	801 bp distal