rs27618448 SNP Detail

Summary

• ID
  rs27618448
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135337912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGGTGT TGAAAACATT
  ATAGTGATAA TAACAATAAC CTCATTTATT CAGCAGAACT TCTGTGATAT GCTCAGATAC
  ATTTTGAGTT TTTTTCCCCC TATGCACCAA GAACATACAT GTGAATCAAA TGAACAAACA
  AGGTGGCGCT TCTCTTAAAG AAGCCACTAA GCCCCGGAAG CCACTACAAG AGGCCATTTC
  S
  CAGATGCAGG GGAAGCAATG CACTGGGCTG AGGTCACAGT AGAAAGTGTG GTTGTGAAGC
  CGTCTCTGAA GTGTTGGCTC TGGGACCTGA GTATTGAGAC TGGAATGGCT TTGGCTGGCT
  CTGGGCAGAG ATAACATCAA GTGTAAAGGC CCTGAGGTTG CAGAAAGTTT AAGGACAGCT
  GTAGGCTGAT ACTTTTCAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37779276	NES09162781	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27618448					SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37779276	NES09162781	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135337912 () rs orientation: forward

Symbol	Name	Function Class
Rr602079	regulatory region 602079	429 bp distal
Tssr1338	transcription start site region 1338	1766 bp downstream