rs27618447 SNP Detail

Summary

• ID
  rs27618447
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135337946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAACCTCA TTTATTCAGC
  AGAACTTCTG TGATATGCTC AGATACATTT TGAGTTTTTT TCCCCCTATG CACCAAGAAC
  ATACATGTGA ATCAAATGAA CAAACAAGGT GGCGCTTCTC TTAAAGAAGC CACTAAGCCC
  CGGAAGCCAC TACAAGAGGC CATTTCCCAG ATGCAGGGGA AGCAATGCAC TGGGCTGAGG
  W
  CACAGTAGAA AGTGTGGTTG TGAAGCCGTC TCTGAAGTGT TGGCTCTGGG ACCTGAGTAT
  TGAGACTGGA ATGGCTTTGG CTGGCTCTGG GCAGAGATAA CATCAAGTGT AAAGGCCCTG
  AGGTTGCAGA AAGTTTAAGG ACAGCTGTAG GCTGATACTT TTCAAAACCT ACTTTAATGA
  GTGTACTTAA ATTTTTTAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37779275	NES09162782	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27618447					SNP	T	T	T	T	T	T	T	T	T	A	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37779275	NES09162782	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135337946 () rs orientation: forward

Symbol	Name	Function Class
Rr602079	regulatory region 602079	463 bp distal
Tssr1338	transcription start site region 1338	1732 bp downstream