rs27617925 SNP Detail

Summary

• ID
  rs27617925
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:147892427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTACATTTTG GAACCAACCA GATATCTCTA AATGCTTTCT
  CCCTCAGACT GAAATGCCAA AAACTAACCC AACCACCAGC ATAAGACCCA GATATCCAGA
  Y
  ATCTTCGTGC ATTGCTGCAG GTTGCATGTC TTAGAAAAAT AATAAAAGCC TCATAGGAAA
  CTACAGTGGC CTATAAAACT GCCTGTAGCA TGTGACCAAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	WSB/EiJ
ss37806750	NES09110754	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	WSB/EiJ
rs27617925					SNP	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806750	NES09110754	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147892427 () rs orientation: forward

Symbol	Name	Function Class
Gm20707	predicted gene 20707	within coordinates
Rr377386	regulatory region 377386	within coordinates
Rr604501	regulatory region 604501	518 bp proximal
Rr604502	regulatory region 604502	1202 bp proximal
Rr604503	regulatory region 604503	1808 bp proximal
Tssr44548	transcription start site region 44548	1832 bp downstream
Zfp984	zinc finger protein 984	Intron