rs27617924 SNP Detail

Summary

• ID
  rs27617924
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:147894089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCC TGCTCCACAC GCCTGCCCAG
  Y
  TCCTGCCTGT TCCCCAGTCC AACAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss37806749	NES09110746	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	C		C	T	C		T	C		C
ss45678439	mCV24211635	ABI	CRAMUS_MOUSE	f	SNP		C	T					T
ss147982786	ENSMUSSNP3393213	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss321414946	CHEV_4_147183741	CHEVERUD	SCREENING_POP	f	SNP												T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs27617924					SNP	C	C	T	C	T	C	C	T	C	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806749	NES09110746	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147894089 () rs orientation: forward

Symbol	Name	Function Class
Gm20707	predicted gene 20707	within coordinates
Rr377386	regulatory region 377386	within coordinates
Rr398847	regulatory region 398847	1925 bp upstream
Rr604501	regulatory region 604501	820 bp distal
Rr604502	regulatory region 604502	within coordinates
Rr604503	regulatory region 604503	146 bp proximal
Tssr44548	transcription start site region 44548	170 bp downstream
Zfp984	zinc finger protein 984	Intron