rs27617923 SNP Detail

Summary

• ID
  rs27617923
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:147894600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACC TACTCTACAC AGCTTCCTCA
  M
  AAGGTTGCTG CCAGACTAGA CCAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ
ss37806748	NES09110747	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ
rs27617923					SNP	A	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806748	NES09110747	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147894600 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm20707	predicted gene 20707			303 bp upstream
Rr377386	regulatory region 377386			within coordinates
Rr398847	regulatory region 398847			1414 bp upstream
Rr604501	regulatory region 604501			1331 bp distal
Rr604502	regulatory region 604502			366 bp distal
Rr604503	regulatory region 604503			within coordinates
Tssr44548	transcription start site region 44548			322 bp upstream
Zfp984	zinc finger protein 984			Intron
				mRNA-UTR