rs27617843 SNP Detail

Summary

• ID
  rs27617843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170461141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTGTAAC GAAGTGATGA
  CTTAGCTCTT TTGCACCATC TGTTCTCCAA GTAGTACAAG CCTGATCCCG GCAGACACTC
  AAAACTCGCC TGGAGCGGCC ATTGTGAATC CAGTCTGATT TCTCCGGAAA GCTGGGAACT
  TTCTCCTGAA TAGAATTTCA CCCAATGCGG AAGAGACAAA TGGCTTCCCC ACTGCTCCCA
  Y
  GGTCTGCCCC ATCTGTGTCA GGAAGCACCA TAAAAAGAAA GTTAGATTCC TGCAGCAATA
  AATATGCAAA TTCCAGCCTT CTTCAGCAAT GGCTAGGGAG GGTATCATTT CCCCCTCTAC
  CACCCCAGAG TCCCTAAGCA GGTTTGAAAG TGTTGACAAA GCATTTTAAA GCCATCTAGC
  TGGCTTTTGT TTGGATGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37816965	NES08722152	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27617843					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37816965	NES08722152	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170461141 () rs orientation: forward

Symbol	Name	Function Class
Gm74719	predicted gene, 74719	within coordinates
Rr571490	regulatory region 571490	within coordinates