rs27617582 SNP Detail

Summary

• ID
  rs27617582
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170503246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCACAGT CCATAAAAGA
  CACTTACAAC AAGACATGAT GGAGGGCTGA GGCCTCTCTT AGGCCATAAA TCCATTTAGG
  TATCTGTCTT AGTCTGGGTT TCTATCCCTG CACAAATAGA TTTTGCCTAA GCGAGTGTTG
  CCAGCTCCGC ACTCGTGCAG GCAATGTCTG GATAACAACT CTAAGAGTGT GGTGCCCTTC
  Y
  TTAGAAAAAC TCCTTCATTT GTCTGCAGGG GCCAGTGAGG CAGAGTCTCT CTATGTAGCT
  CAGGCCACAC TAGGATTTGC TGCACAGTCC AGCCTTGGGT TTGCAATCCT TCTGCCTCTG
  ACTCCCATGG GTTGAGATTA TACAGGCATG TGCAGCCATG AGCAGCACCA TTTTAAATGT
  GTATATGCGT TGTATATTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37816702	NES08721754	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27617582					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37816702	NES08721754	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170503246 () rs orientation: forward

Symbol	Name	Function Class
Gm14264	predicted gene 14264	within coordinates
Rr571499	regulatory region 571499	1666 bp distal
Rr571500	regulatory region 571500	617 bp proximal
Rr571501	regulatory region 571501	1129 bp proximal