rs27617581 SNP Detail

Summary

• ID
  rs27617581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170503862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTAATAAA CCTACATCCA
  TGCACACACA GCACGGCCAA ACTCCATAAG TGGGTGATTT GTGTAATGGG ATCAAAATTT
  TAAAAAGAAA ATAAAGCACA TATCAACATT AAGATATAAA AGATAGAATC GTAATTATTT
  TCAGATTCAT TTTTCCTGAG AGCTAGTGAG GCAAAAAGCA GATCTTAGCG TAAATTCCAG
  Y
  AAGCCAGGAT GACAAAAATC AATAGTTTTC CCATGGGCTA AAAACGGTGT TAGCAAACAA
  TGCCACATCC TCGGAAAACA AAAACAAAGC AACGCCACAG AGTAAAGTCC AATTCAGAAT
  GATAGAACAA TCAGAAGAGA GATTAATACA CACAAGGACA TTTAGAGAGA GGCAGGGCAG
  CCAAACTGAA CATGAAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37816701	NES08721715	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27617581					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37816701	NES08721715	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170503862 () rs orientation: forward

Symbol	Name	Function Class
Gm14264	predicted gene 14264	within coordinates
Rr571500	regulatory region 571500	1 bp proximal
Rr571501	regulatory region 571501	513 bp proximal