rs27617573 SNP Detail

Summary

• ID
  rs27617573
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170504886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTGAGTG ATATTTTTAA
  ATGCGCAGTG CAAGAATGAC AAAGCCAGCT GTGACTCAGA TGCTGGGCAG CCAGAGCCGC
  TGTGCTCTTG GCTGGCCTCA GAAAGGCAGA AGACGTTTTC TTTGTTCTTA GCCACTCTTG
  ACATTTCGTT TCCCCCTGGT CTGGACTACT GTAAACAGCT TACTGAAGGT TCTGTGCCCC
  R
  CTGAACTCAA CGTACAAGTT TGGGCAAGAC AGCAAACTCA AAACAGACAG TAAATTTGGG
  CATTACCAGC TGTCTCAGGG TTTCTATTGC TGCGAAGAGA CACCGTGACC AGGGCAACTC
  AGAAAGGACA ACATTTAACC AGAGCTGGCT TACAGGTTCA GAGGTTTAGT TCACTGTCGC
  CATGGCACAA AGCATGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37816693	NES08721725	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27617573					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37816693	NES08721725	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170504886 () rs orientation: forward

Symbol	Name	Function Class
Gm14264	predicted gene 14264	501 bp upstream
Rr571500	regulatory region 571500	512 bp distal
Rr571501	regulatory region 571501	23 bp distal