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rs27617490 SNP Detail
Summary
  • ID
    rs27617490
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:148140235 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGGCTCCATG AGCCTGCATC
    TCTCAACAGG CACACCATGG AGAGAGAGAC ACAGGCTCTG TGAGCCTGCA TCCCTCAACA
    GGCACACCAC GGAGAGAGAG ACACAGGCTC CGTGAGCCTG CATCCCGGTA TCTTCCTCAC
    CTGGAGCCCC TCTCCCTCAT CTCTCTACAC AGGATAATGG CAGCTAGACT AGCAGGAAGC
    R
    TCCCGGCTCT GGCTGGACCT AAGATGCCCC GTCGAGGAGG CTGATGCTCT CTGCTCAAGC
    CCAGAGCCCG TGTTCTTGCT GTGGCAAGCG CCTCCATCCT CAGGGGGAGG AGACCAGAGA
    TTGCCCAGCC ACTGCACCAA GGCAGCCTCT AGGAGGTGAA CTTTGACCTG GGGTCTGTGT
    GAGACAGACA GTAGGCACTG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37805917 NES09121182 PERLEGEN MM_PANEL2 f SNP G G G G G G A G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27617490 SNP G G G G G G A G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37805917 NES09121182 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:148140235 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm13201 predicted gene 13201 80 bp downstream
Gm66468 predicted gene, 66468 999 bp downstream
Mthfr methylenetetrahydrofolate reductase mRNA-UTR
Noncoding-Transcript-Variant
Rr604565 regulatory region 604565 1457 bp distal
Rr604566 regulatory region 604566 490 bp proximal
Rr604567 regulatory region 604567 1949 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory