rs27617488 SNP Detail

Summary

• ID
  rs27617488
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148140674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTACAGAA ACCTCCTCCC
  TGCTCAGCGG ACTACACACC AGGTCCCCAA GAGAGGCCTG GCTGGTAACA CAAGCCTTTC
  TTGCCATCTT AGGCCAAAGA GTGCAGGAGT TCTGCCTCTG CAGAAGGTTG GTTGTGTCTG
  TTCTGTGGCT GGGAAGAAAG TGCCCCTTCA GGGTTAAAAG CGTTCTGTCC TCAATGGAGG
  Y
  TTGCTCTTGG CCTTGTTTTC TGTCCTCTTA GCGAGATTTA CCTGGGCAGG GCCCAGCTCT
  TCCCGTGGCT GTATGAAGCC TGCTCCCTTG CTTCTGAGCA GACTCCTGCC AGCTGCACCG
  TCTTCTCTGT TGGGCCTAGA CTAGGGGCTG TCCCTGGCAC TCCTCCCCAG TCAGCCCTCA
  GGCCTGGCTG CCTGGGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37805915	NES09121184	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27617488					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805915	NES09121184	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148140674 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm13201	predicted gene 13201			within coordinates
Gm66468	predicted gene, 66468			560 bp downstream
Mthfr	methylenetetrahydrofolate reductase			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr604565	regulatory region 604565			1896 bp distal
Rr604566	regulatory region 604566			51 bp proximal
Rr604567	regulatory region 604567			1510 bp proximal