AGGCCCTTTC CTTTGCCCTG GCAGCCAGCC CACCCTGTCT CTGCCCAAAT ATCTAGGCTC AGAATAGACT GGACTTGTGA CCCGGGAAGC TATGCCCCGT GACCTGCAAA CAAGACATCT GTTCTGGACG CAGGCCCTGC AAGGACCAGC ATGGGGAGCC ACTGCCACAA ACAGACTGGT TCTCTGAGTG AGTGAAACTG W TACTTGGCTG GGCTTGAGGC CCCTAGTCAA GGGCTCTAAT GTCCAGGCTG TGTGCTCTGT AACCAATGGC CAATTCAACT GAATGAGGAT AGCGCAGGGT GGTGAGCAGG GACACCCTCC CCTCTCCCTG GCTCAGCCTG GAGGTGGCAC TGGTCTTGGA GGGCTGGCTG GGTGAACCAA GGTAAAGTCA CCTGGAAAAG W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37805905 | NES09121202 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | T | A | A | A | A | A | A | A | A |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs27617478 | SNP | A | A | A | A | A | A | T | A | A | A | A | A | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37805905 | NES09121202 | PERLEGEN | MM_PANEL | f | SNP | A/T |
Location: Chr4:148141604 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm13201 | predicted gene 13201 | within coordinates | ||||||
Gm66468 | predicted gene, 66468 | within coordinates | ||||||
Mthfr | methylenetetrahydrofolate reductase | Intron | ||||||
mRNA-UTR | ||||||||
Noncoding-Transcript-Variant | ||||||||
Rr604566 | regulatory region 604566 | within coordinates | ||||||
Rr604567 | regulatory region 604567 | 580 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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