CTCAA GTCTCCAGGC TGTGGGCTGG Y CCAAGGCGCT AATGGGAAAA GAAGG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
MSM/Ms |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37805898 | NES09121216 | PERLEGEN | MM_PANEL2 | f | SNP | T | C | T | C | T | T | C | T | C | T | C | T | T | T | C | ||||
ss147990928 | ENSMUSSNP1786551 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | C | T | T | |||||||||||||||
ss321416729 | CHEV_4_147432308 | CHEVERUD | SCREENING_POP | f | SNP | T | T | |||||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
MSM/Ms |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs27617471 | SNP | T | T | C | T | C | T | T | C | T | C | T | T | C | T | T | T | T | T | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37805898 | NES09121216 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr4:148142656 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm13201 | predicted gene 13201 | within coordinates | ||||||
Gm66468 | predicted gene, 66468 | within coordinates | ||||||
Mthfr | methylenetetrahydrofolate reductase | Intron | ||||||
mRNA-UTR | ||||||||
Noncoding-Transcript-Variant | ||||||||
Rr604566 | regulatory region 604566 | 861 bp distal | ||||||
Rr604567 | regulatory region 604567 | 451 bp distal | ||||||
Rr604568 | regulatory region 604568 | 964 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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