rs27617464 SNP Detail

Summary

• ID
  rs27617464
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148142958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTG CCAGAGCAGG CTCCCACCTG
  Y
  GTGCATAATG GGGCGCTTCA CCTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37805891	NES09121231	PERLEGEN	MM_PANEL2	f	SNP		C	T	C	T	C	T	C	T		C		T	T		T
ss147990963	ENSMUSSNP3062568	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C					T					T
ss321416736	CHEV_4_147432610	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27617464					SNP	T	C	T	C	T	C	T	C	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805891	NES09121231	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148142958 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm13201	predicted gene 13201			within coordinates
Gm66468	predicted gene, 66468			within coordinates
Mthfr	methylenetetrahydrofolate reductase			mRNA-UTR
				Noncoding-Transcript-Variant
Rr604566	regulatory region 604566			1163 bp distal
Rr604567	regulatory region 604567			753 bp distal
Rr604568	regulatory region 604568			662 bp proximal
Rr604569	regulatory region 604569			1722 bp proximal