rs27617458 SNP Detail

Summary

• ID
  rs27617458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148143911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCTTGGT GAGGCCAGAT
  TGTCTTTGGG AACACTGTCT AGCCTGCCAG GGACTTGGGC TGAGTCCCCT AGTTACATCT
  GCAGACCTCT AGGCAGTGTT GTTTCTTGCA CCTGGCATTT GTGATTATCT CTCTCCTCCT
  GATAGGCCTT CAGCCTCTCA CTGTTGTGTC AGAGCTAAGA ACTTCTGGTC TGAAGGTGAC
  Y
  TTTTGGTACA GAAAAGAGAA AAACCCAAAT TTCTACTTTA TTTTCTAAAA TGAGCACATT
  GCATTTTTCC AATTAAAAAA AAATTGCTGT CTCCATATAG CTGTTTTTAA ATGCTTAGCG
  TAATTTATTT TTGTGTGCAT GTGTGTGTGT GCGTGTGTGT ATGTGTGTGC GTGTGTATGT
  GTGTGTGCGC GCGCACGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37805882	NES09121240	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27617458					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805882	NES09121240	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148143911 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm13201	predicted gene 13201			within coordinates
Gm66468	predicted gene, 66468			within coordinates
Mthfr	methylenetetrahydrofolate reductase			mRNA-UTR
				Noncoding-Transcript-Variant
Rr604567	regulatory region 604567			1706 bp distal
Rr604568	regulatory region 604568			39 bp distal
Rr604569	regulatory region 604569			769 bp proximal
Rr604570	regulatory region 604570			1063 bp proximal
Rr604571	regulatory region 604571			1468 bp proximal