rs27617434 SNP Detail

Summary

• ID
  rs27617434
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148149099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACCCTCC GTGATCCAAT
  CCTGGGCTCT GAGATGGCTC TGGAACGGAG TGTCACTAAG GGACCCTTCT GGTCTTCTCC
  TCTCCCAGGT GTCCCCACCC AGTCCTTGGC TCCCTCTATC AGCAGGAGAG CCAGTGGCTC
  AGGCCACTCG CACCAGTCCC TGGCCTCGCT CCTGGACTCT CCTGCACTGT CCACCATCCC
  R
  CCAGCAGCTG CTTCCACAGA CCCATCACAG CCCCACAGTT CCAATTCCAG GCCCAGCGAG
  CAGCCAGCTC TCCCTGGGCC CGTGGAGTAC CGCTGCTCCA GCTGAGGAGG ACACTGGGGA
  GGAGGGGGAA TATCCGCTCT GAGCACAGCC CTTAGGCCAG CCTCACCTCT TCCTCCCCGC
  AGCAACAGGT ATGGCCTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37805858	NES09120970	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27617434					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805858	NES09120970	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148149099 () rs orientation: forward

Symbol	Name	Function Class
Gm13201	predicted gene 13201	within coordinates
Gm66468	predicted gene, 66468	within coordinates
Rr604572	regulatory region 604572	1189 bp proximal
Rr604573	regulatory region 604573	1327 bp proximal
Rr604574	regulatory region 604574	1565 bp proximal