rs27617425 SNP Detail

Summary

• ID
  rs27617425
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148151452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAG GGATGCAGCC CAGCCAAGGT
  Y
  TGCTCCCTCG GGGAACTCCT CCAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37805849	NES09120943	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T		C		C	T		C	T	T	T		T
ss45652261	mCV24212003	ABI	CRAMUS_MOUSE	f	SNP	T	T	C				C		T
ss147991227	ENSMUSSNP7021272	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss321416798	CHEV_4_147441104	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27617425					SNP	T	T	C	T	C	T	C	C	T	C	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805849	NES09120943	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148151452 () rs orientation: forward

Symbol	Name	Function Class
Chchd2-ps	coiled-coil-helix-coiled-coil-helix domain containing 2, pseudogene	1036 bp downstream
Gm13201	predicted gene 13201	within coordinates
Gm66468	predicted gene, 66468	within coordinates
Rr604572	regulatory region 604572	157 bp distal
Rr604573	regulatory region 604573	1005 bp distal
Rr604574	regulatory region 604574	767 bp distal
Tssr44572	transcription start site region 44572	1539 bp downstream