rs27617424 SNP Detail

Summary

• ID
  rs27617424
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148151699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCACCC CTAAAAGGCC
  CAATTCAGCA AAGTCCCCTC CCGCTGTAGC ATTTTTCCTG AGCTTCACTG GGCCCTTGAA
  CTTGGCTAAT GGGGGCTCTG GTTGAAGGAA AGGGACTCCC CTGTGTTTGC CACAGGCTCA
  CCTGCCTTCA GCCAGTGGAG GGCCAACTGA GTCACCTTTG TGACATCTGA GGCCTGGAGC
  Y
  GCTTCATCTC CATCCACTGT CCCAGGCATG CCCTTAAGGT CCTCACTCTT CGGTGGGCCA
  GATGTCTTCT GTACTGGGCC CCTCTTTGCG CTAACCGTTG CCAGGCCCTG AAGCACCTAC
  ACCATGGAGA GAAACTGCCA CTGCCATGCC CACACTTCCG GACCCCCGGG GTTTGCCTTT
  CTGAGCCTCC ATATCTCGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37805848	NES09120944	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C		C	C	C	C	C	C	C	C	C
ss45645098	mCV24212005	ABI	CRAMUS_MOUSE	f	SNP	T	C					C		C
ss147991237	ENSMUSSNP4539060	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27617424					SNP	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805848	NES09120944	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148151699 () rs orientation: forward

Symbol	Name	Function Class
Chchd2-ps	coiled-coil-helix-coiled-coil-helix domain containing 2, pseudogene	789 bp downstream
Gm13201	predicted gene 13201	within coordinates
Gm66468	predicted gene, 66468	within coordinates
Rr604572	regulatory region 604572	404 bp distal
Rr604573	regulatory region 604573	1252 bp distal
Rr604574	regulatory region 604574	1014 bp distal
Tssr44572	transcription start site region 44572	1292 bp downstream