rs27617320 SNP Detail

Summary

• ID
  rs27617320
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148170805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACGA TGTAGGCCAT CAAAACCAAA
  R
  TTAGCCCAAA GCAACAATAC CAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37805743	NES09120538	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G	A		A	G	G		G	G	G	G		G
ss45656889	mCV24935096	ABI	CRAMUS_MOUSE	f	SNP		G	G					G	A
ss147991901	ENSMUSSNP3053737	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
ss321416952	CHEV_4_147460457	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27617320					SNP	G	G	G	A	G	G	A	G	A	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805743	NES09120538	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148170805 () rs orientation: forward

Symbol	Name	Function Class
Agtrap	angiotensin II, type I receptor-associated protein	Intron
Cpgi15288	CpG island 15288	1329 bp proximal
Rr377389	regulatory region 377389	408 bp downstream
Rr377390	regulatory region 377390	1205 bp upstream
Rr604582	regulatory region 604582	within coordinates
Rr604583	regulatory region 604583	642 bp proximal
Rr604584	regulatory region 604584	1673 bp proximal
Tssr40250	transcription start site region 40250	472 bp downstream
Tssr44579	transcription start site region 44579	1613 bp downstream
Tssr44580	transcription start site region 44580	1688 bp downstream
Tssr44581	transcription start site region 44581	1710 bp downstream