rs27617319 SNP Detail

Summary

• ID
  rs27617319
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148171408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTATCC TGCAGGAAGC
  CCTGGGTTTC ATCGCCACTA CTGTGTAATC CTGGCACTGG AGAGGTGGAG GCAGGAGGAT
  CAGAAGTTTG TGGCAATCCT CAGGTACACA GTAAGTTCAA GGCTACACAG TAAGTTAGTA
  CACGAGACCC TGACTCAAAT GAATAAAACA TATCAGCCCA TAAACATCAC ATTTTTCTCA
  Y
  CTGTTCCTGC GTTTTATTAT TATTTGTTAG TGTGTGGTCC TGGGATGGAA CCCCAGGCCT
  GGGGTGGGCT ACTCAAATGT TCTACCATTG AGACTTGTGC TGTCCTCGTA ATTATTCCAG
  CAGAATAAGG CAGAGCCTGA CCTCCAGACT GCCTCCAAGT CCTGCCTGTA ATTCTGTCCC
  TAGATAATGG ATCGCTCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37805742	NES09120483	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	T	C		C	C	C	C	C	C	T
ss45719837	mCV24935120	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C	C
ss147991928	ENSMUSSNP3798108	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27617319					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805742	NES09120483	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148171408 () rs orientation: forward

Symbol	Name	Function Class
Agtrap	angiotensin II, type I receptor-associated protein	Intron
Cpgi15288	CpG island 15288	726 bp proximal
Rr377389	regulatory region 377389	1011 bp downstream
Rr377390	regulatory region 377390	602 bp upstream
Rr604582	regulatory region 604582	593 bp distal
Rr604583	regulatory region 604583	39 bp proximal
Rr604584	regulatory region 604584	1070 bp proximal
Tssr40250	transcription start site region 40250	1075 bp downstream
Tssr44579	transcription start site region 44579	1010 bp downstream
Tssr44580	transcription start site region 44580	1085 bp downstream
Tssr44581	transcription start site region 44581	1107 bp downstream