rs27617315 SNP Detail

Summary

• ID
  rs27617315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148171854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGT TTACTTCCAG GTCCACACGG
  Y
  TCTGGCCGAA GCTAAGTGGC CAGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37805738	NES09120487	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	C	C	T	C		T	C	C	C		C
ss147991947	ENSMUSSNP2418225	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss321416961	CHEV_4_147461506	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27617315					SNP	C	C	T	C	T	C	C	C	T	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805738	NES09120487	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148171854 () rs orientation: forward

Symbol	Name	Function Class
Agtrap	angiotensin II, type I receptor-associated protein	Intron
Cpgi15288	CpG island 15288	280 bp proximal
Rr377389	regulatory region 377389	1457 bp downstream
Rr377390	regulatory region 377390	156 bp upstream
Rr604582	regulatory region 604582	1039 bp distal
Rr604583	regulatory region 604583	within coordinates
Rr604584	regulatory region 604584	624 bp proximal
Tssr40250	transcription start site region 40250	1521 bp downstream
Tssr44579	transcription start site region 44579	564 bp downstream
Tssr44580	transcription start site region 44580	639 bp downstream
Tssr44581	transcription start site region 44581	661 bp downstream
Tssr44582	transcription start site region 44582	1784 bp downstream
Tssr44583	transcription start site region 44583	1812 bp downstream