rs27617312 SNP Detail

Summary

• ID
  rs27617312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148172201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCA GGAGCGCAGG CCCGGGCGGT
  Y
  CGGTGCCCGT GCCAGCCTGG GTCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37805735	NES09120490	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	T	C	T	C	C		C	C	C	C		C
ss45668980	mCV24935144	ABI	CRAMUS_MOUSE	f	SNP	C	C	C						T
ss147991964	ENSMUSSNP3247325	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						T
ss321416964	CHEV_4_147461853	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27617312					SNP	C	C	C	T	C	C	T	C	T	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805735	NES09120490	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148172201 () rs orientation: forward

Symbol	Name	Function Class
Agtrap	angiotensin II, type I receptor-associated protein	Intron
Cpgi15288	CpG island 15288	within coordinates
Rr377389	regulatory region 377389	1804 bp downstream
Rr377390	regulatory region 377390	within coordinates
Rr604582	regulatory region 604582	1386 bp distal
Rr604583	regulatory region 604583	within coordinates
Rr604584	regulatory region 604584	277 bp proximal
Tssr40250	transcription start site region 40250	1868 bp downstream
Tssr44579	transcription start site region 44579	217 bp downstream
Tssr44580	transcription start site region 44580	292 bp downstream
Tssr44581	transcription start site region 44581	314 bp downstream
Tssr44582	transcription start site region 44582	1437 bp downstream
Tssr44583	transcription start site region 44583	1465 bp downstream