rs27617311 SNP Detail

Summary

• ID
  rs27617311
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148172434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCGGCCC TGTCCGTCTC
  TGTCCCCAGG TGTCCCTCTC CGTGTCCGCC GCCTCCTCCC CGGGGCTCTG GACCTTCCCT
  TCTGCTCCGA CTCCGTTCCC CAGGTTCCTG GACCCCCGCC CGCCCCGGCC GCGCGGCCAC
  CTTCAAGTTC ACGGCAGGCA GCTCCATCCC GACCCGGCGG AGGGCACCTG AGCGACGGCC
  K
  CGGGGACTCC TGGGCTCCGA ACTCGGGAAC AAACTTCCTG GCCCCGCCCG TCGCGTTGCG
  CCAGTTCCAA CGGCGGGAGG CCAACTCGCG CGGCCACGTG ACTGCAGCCG GTTGCTAGGA
  GACGGCGTCA GGCAGCTGCT CTTGCTGCTA GGCTCAGGCT CCTGCTACTA CTACTGCCTA
  GGCCTCTACC AGCTCCTGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37805734	NES09120491	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27617311					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805734	NES09120491	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148172434 () rs orientation: forward

Symbol	Name	Function Class
Agtrap	angiotensin II, type I receptor-associated protein	mRNA-UTR
Cpgi15288	CpG island 15288	within coordinates
Rr377390	regulatory region 377390	within coordinates
Rr604582	regulatory region 604582	1619 bp distal
Rr604583	regulatory region 604583	within coordinates
Rr604584	regulatory region 604584	44 bp proximal
Tssr44579	transcription start site region 44579	within coordinates
Tssr44580	transcription start site region 44580	59 bp downstream
Tssr44581	transcription start site region 44581	81 bp downstream
Tssr44582	transcription start site region 44582	1204 bp downstream
Tssr44583	transcription start site region 44583	1232 bp downstream