rs27617310 SNP Detail

Summary

• ID
  rs27617310
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148172595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT CTTGCTGCTA GGCTCAGGCT
  M
  CTGCTACTAC TACTGCCTAG GCCTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37805733	NES09120492	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A		C	A	A	A		C
ss321416965	CHEV_4_147462247	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27617310					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805733	NES09120492	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148172595 () rs orientation: forward

Symbol	Name	Function Class
Agtrap	angiotensin II, type I receptor-associated protein	107 bp upstream
Cpgi15288	CpG island 15288	within coordinates
Rr377390	regulatory region 377390	within coordinates
Rr604582	regulatory region 604582	1780 bp distal
Rr604583	regulatory region 604583	118 bp distal
Rr604584	regulatory region 604584	within coordinates
Tssr44579	transcription start site region 44579	111 bp upstream
Tssr44580	transcription start site region 44580	82 bp upstream
Tssr44581	transcription start site region 44581	69 bp upstream
Tssr44582	transcription start site region 44582	1043 bp downstream
Tssr44583	transcription start site region 44583	1071 bp downstream