rs27617309 SNP Detail

Summary

• ID
  rs27617309
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148172778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTG CGGGTGTGGT AACAGTTGGT
  R
  TCTGCCCAGA ACATCCTCTC TCCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37805732	NES09120493	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G	A	G	A	G	G		G	G	G	G		G
ss147991968	ENSMUSSNP872875	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
ss321416966	CHEV_4_147462430	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27617309					SNP	G	G	G	A	G	G	A	G	A	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805732	NES09120493	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148172778 () rs orientation: forward

Symbol	Name	Function Class
Agtrap	angiotensin II, type I receptor-associated protein	290 bp upstream
Cpgi15288	CpG island 15288	within coordinates
Rr377390	regulatory region 377390	within coordinates
Rr604582	regulatory region 604582	1963 bp distal
Rr604583	regulatory region 604583	301 bp distal
Rr604584	regulatory region 604584	within coordinates
Tssr44579	transcription start site region 44579	294 bp upstream
Tssr44580	transcription start site region 44580	265 bp upstream
Tssr44581	transcription start site region 44581	252 bp upstream
Tssr44582	transcription start site region 44582	860 bp downstream
Tssr44583	transcription start site region 44583	888 bp downstream