rs27617304 SNP Detail

Summary

• ID
  rs27617304
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148173337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTCCTTC CAAGCTTATT
  GGATTTCAAG AGAATTTCAT AGAATACATT AAAAAGAAAG GAAGGAAGGG GAAGTCGAGG
  CAAAGATATA ATGATATCAA AGCCTGCCTG GCTTATAAAG TAAGACCGTG TTTATGTCTT
  ATTGATCTAC TTAGTGGGGT GGGTGGATGC ATGCCACAAC ATGAGTGGGG AGGCGAGAGT
  R
  TGGATGGTTC TCCTTCCATC CTGGGTTCTG AAGCCAGGGT AAGGAAAGGG AGACAGGACC
  TGAAGTCAAG AAAGGGGCTT TCCAGCTGAT GGCTGAATAG CCCCCACCAC AAGGGAAGGA
  GAGGCTGGAG GACTCTAGAG CCCAGCAGTT TAAAGCCAAC CTGGGCAACA GTGAGACTTT
  GTCCAAAAAT GAGGGGGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37805727	NES09120472	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27617304					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805727	NES09120472	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148173337 () rs orientation: forward

Symbol	Name	Function Class
Agtrap	angiotensin II, type I receptor-associated protein	849 bp upstream
Rr377390	regulatory region 377390	within coordinates
Rr604583	regulatory region 604583	860 bp distal
Rr604584	regulatory region 604584	359 bp distal
Tssr44579	transcription start site region 44579	853 bp upstream
Tssr44580	transcription start site region 44580	824 bp upstream
Tssr44581	transcription start site region 44581	811 bp upstream
Tssr44582	transcription start site region 44582	301 bp downstream
Tssr44583	transcription start site region 44583	329 bp downstream