rs27617298 SNP Detail

Summary

• ID
  rs27617298
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148173900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGCCCAGC CTGGGCTGGT GGGTGTGACT CCAGAAGAAT
  AGAAGCCATA TGGGAACCCA TGAGACCCCC TGAGTGGACA CAAGATGACA TCTAGGTCAC
  W
  GATCCCCAGA TAGGACTTTT CTTCTGGGAA GATGAGAGAA GTTGGGGCGG GGCAGACCTA
  ATTTAATAGC CCATTTGAAG GCACAACCCT CAGTCCCCAA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37805721	NES09120452	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	T	T	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27617298					SNP	T	A	A	T	T	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805721	NES09120452	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148173900 () rs orientation: forward

Symbol	Name	Function Class
Agtrap	angiotensin II, type I receptor-associated protein	1412 bp upstream
Rr377390	regulatory region 377390	within coordinates
Rr604583	regulatory region 604583	1423 bp distal
Rr604584	regulatory region 604584	922 bp distal
Tssr44579	transcription start site region 44579	1416 bp upstream
Tssr44580	transcription start site region 44580	1387 bp upstream
Tssr44581	transcription start site region 44581	1374 bp upstream
Tssr44582	transcription start site region 44582	253 bp upstream
Tssr44583	transcription start site region 44583	225 bp upstream