rs27617297 SNP Detail

Summary

• ID
  rs27617297
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148173901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAC AAGATGACAT CTAGGTCACA
  S
  ATCCCCAGAT AGGACTTTTC TTCTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37805720	NES09120453	PERLEGEN	MM_PANEL2	f	SNP		G	C	G	C	G	C	G		G	G	G
ss147992063	ENSMUSSNP243051	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G					C
ss321416985	CHEV_4_147463553	CHEVERUD	SCREENING_POP	f	SNP									C				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27617297					SNP	G	G	C	G	C	G	C	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805720	NES09120453	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148173901 () rs orientation: forward

Symbol	Name	Function Class
Agtrap	angiotensin II, type I receptor-associated protein	1413 bp upstream
Cpgi15288	CpG island 15288	893 bp distal
Rr377390	regulatory region 377390	within coordinates
Rr604583	regulatory region 604583	1424 bp distal
Rr604584	regulatory region 604584	923 bp distal
Tssr44579	transcription start site region 44579	1417 bp upstream
Tssr44580	transcription start site region 44580	1388 bp upstream
Tssr44581	transcription start site region 44581	1375 bp upstream
Tssr44582	transcription start site region 44582	254 bp upstream
Tssr44583	transcription start site region 44583	226 bp upstream